Metagenomics Workshop
1.1
Setting up your de.NBI Cloud SimpleVM instance
Command Line Introduction: Excercises
The Tutorial Data Set
FastQC Quality Control
Assembly
Velvet Assembly
MEGAHIT Assembly
metaSPAdes Assembly
IDBA-UD Assembly
Ray Assembly
Assembly Evaluation
Binning
Classification
Data submission to ENA
Nextflow / nf-core
Metagenomics Workshop
Assembly
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Assembly
We are going to use different assemblers and compare the results.
Velvet Assembly
MEGAHIT Assembly
metaSPAdes Assembly
IDBA-UD Assembly
Ray Assembly